6WM5 image
Deposition Date 2020-04-20
Release Date 2020-05-27
Last Version Date 2023-10-18
Entry Detail
PDB ID:
6WM5
Title:
Structure of a phosphatidylinositol-phosphate synthase (PIPS) from Mycobacterium kansasii
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AfCTD-Phosphatidylinositol-phosphate synthase (PIPS) fusion
Gene (Uniprot):MKAN_26045
Mutations:D17L,Q77L,G79S
Chain IDs:A, B (auth: C)
Chain Length:370
Number of Molecules:2
Biological Source:Archaeoglobus fulgidus, Mycobacterium kansasii
Primary Citation
Structural and Functional Characterization of Phosphatidylinositol-Phosphate Biosynthesis in Mycobacteria.
J.Mol.Biol. 432 5137 5151 (2020)
PMID: 32389689 DOI: 10.1016/j.jmb.2020.04.028

Abstact

In mycobacteria, phosphatidylinositol (PI) acts as a common lipid anchor for key components of the cell wall, including the glycolipids phosphatidylinositol mannoside, lipomannan, and lipoarabinomannan. Glycolipids in Mycobacterium tuberculosis, the causative agent of tuberculosis, are important virulence factors that modulate the host immune response. The identity-defining step in PI biosynthesis in prokaryotes, unique to mycobacteria and few other bacterial species, is the reaction between cytidine diphosphate-diacylglycerol and inositol-phosphate to yield phosphatidylinositol-phosphate, the immediate precursor to PI. This reaction is catalyzed by the cytidine diphosphate-alcohol phosphotransferase phosphatidylinositol-phosphate synthase (PIPS), an essential enzyme for mycobacterial viability. Here we present structures of PIPS from Mycobacterium kansasii with and without evidence of donor and acceptor substrate binding obtained using a crystal engineering approach. PIPS from Mycobacterium kansasii is 86% identical to the ortholog from M. tuberculosis and catalytically active. Functional experiments guided by our structural results allowed us to further characterize the molecular determinants of substrate specificity and catalysis in a new mycobacterial species. This work provides a framework to strengthen our understanding of phosphatidylinositol-phosphate biosynthesis in the context of mycobacterial pathogens.

Legend

Protein

Chemical

Disease

Primary Citation of related structures