6WL3 image
Deposition Date 2020-04-18
Release Date 2020-12-23
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6WL3
Keywords:
Title:
preTCRbeta-pMHC complex crystal structure
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.45 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:H-2 class I histocompatibility antigen, K-B alpha chain
Gene (Uniprot):H2-K1
Chain IDs:A, D, G
Chain Length:185
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:ARG-GLY-TYR-LEU-TYR-GLN-GLY-LEU
Chain IDs:B, E, H
Chain Length:8
Number of Molecules:3
Biological Source:Vesicular stomatitis virus
Polymer Type:polypeptide(L)
Molecule:N15 preTCR beta
Chain IDs:C, F, I
Chain Length:239
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Pre-T cell receptors topologically sample self-ligands during thymocyte beta-selection.
Science 371 181 185 (2021)
PMID: 33335016 DOI: 10.1126/science.abe0918

Abstact

Self-discrimination, a critical but ill-defined molecular process programmed during thymocyte development, requires myriad pre-T cell receptors (preTCRs) and αβTCRs. Using x-ray crystallography, we show how a preTCR applies the concave β-sheet surface of its single variable domain (Vβ) to "horizontally" grab the protruding MHC α2-helix. By contrast, αβTCRs purpose all six complementarity-determining region (CDR) loops of their paired VαVβ module to recognize peptides bound to major histocompatibility complex molecules (pMHCs) in "vertical" head-to-head binding. The preTCR topological fit ensures that CDR3β reaches the peptide's featured C-terminal segment for pMHC sampling, establishing the subsequent αβTCR canonical docking mode. "Horizontal" docking precludes germline CDR1β- and CDR2β-MHC binding to broaden β-chain repertoire diversification before αβTCR-mediated selection refinement. Thus, one subunit successively attunes the recognition logic of related multicomponent receptors.

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Primary Citation of related structures