ISDA

Deposition Date 2020-04-12

Release Date 2020-08-26

Last Version Date 2024-03-06

Entry Detail

PDB ID:

6WJ6

Keywords:

PHOTOSYNTHESIS

Title:

Cryo-EM structure of apo-Photosystem II from Synechocystis sp. PCC 6803

Biological Source:

Source Organism:

Synechocystis sp. (strain PCC 6803 / Kazusa) (Taxon ID: 1111708)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.58 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1 2
Gene (Uniprot):psbA2, psbA3
Chain IDs:A
Chain Length:360
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P16033 Pfam ID:PF00124 EC:1.10.3.9

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:B
Chain Length:507
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P05429 Pfam ID:PF00421

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:C
Chain Length:460
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P09193 Pfam ID:PF00421

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:D
Chain Length:352
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P09192 Pfam ID:PF00124

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:E
Chain Length:81
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P09190 Pfam ID:PF00283, PF00284

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:F
Chain Length:44
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P09191 Pfam ID:PF00283

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:G (auth: H)
Chain Length:64
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P14835 Pfam ID:PF00737

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:H (auth: I)
Chain Length:38
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:Q54697 Pfam ID:PF02532

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:I (auth: K)
Chain Length:45
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P15819 Pfam ID:PF02533

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:J (auth: L)
Chain Length:39
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:Q55354 Pfam ID:PF02419

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:K (auth: M)
Chain Length:35
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P72701 Pfam ID:PF05151

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:L (auth: T)
Chain Length:31
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P74787 Pfam ID:PF01405

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center X protein
Gene (Uniprot):psbX
Chain IDs:M (auth: X)
Chain Length:39
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)

UniProt ID:P72575 Pfam ID:PF06596

Ligand Molecules