6WI7 image
Deposition Date 2020-04-08
Release Date 2021-04-14
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6WI7
Keywords:
Title:
RING1B-BMI1 fusion in closed conformation
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase RING2, Polycomb complex protein BMI-1 chimera
Gene (Uniprot):BMI1
Chain IDs:A
Chain Length:211
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Small-molecule inhibitors targeting Polycomb repressive complex 1 RING domain.
Nat.Chem.Biol. 17 784 793 (2021)
PMID: 34155404 DOI: 10.1038/s41589-021-00815-5

Abstact

Polycomb repressive complex 1 (PRC1) is an essential chromatin-modifying complex that monoubiquitinates histone H2A and is involved in maintaining the repressed chromatin state. Emerging evidence suggests PRC1 activity in various cancers, rationalizing the need for small-molecule inhibitors with well-defined mechanisms of action. Here, we describe the development of compounds that directly bind to RING1B-BMI1, the heterodimeric complex constituting the E3 ligase activity of PRC1. These compounds block the association of RING1B-BMI1 with chromatin and inhibit H2A ubiquitination. Structural studies demonstrate that these inhibitors bind to RING1B by inducing the formation of a hydrophobic pocket in the RING domain. Our PRC1 inhibitor, RB-3, decreases the global level of H2A ubiquitination and induces differentiation in leukemia cell lines and primary acute myeloid leukemia (AML) samples. In summary, we demonstrate that targeting the PRC1 RING domain with small molecules is feasible, and RB-3 represents a valuable chemical tool to study PRC1 biology.

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