6WGW image
Deposition Date 2020-04-06
Release Date 2020-07-08
Last Version Date 2023-10-18
Entry Detail
PDB ID:
6WGW
Keywords:
Title:
CYP101D1 D259E Hydroxycamphor bound
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.73 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 64 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome P450 101D1
Gene (Uniprot):Saro_0514
Mutagens:D259E
Chain IDs:A, B
Chain Length:437
Number of Molecules:2
Biological Source:Novosphingobium aromaticivorans
Primary Citation
Proton Relay Network in the Bacterial P450s: CYP101A1 and CYP101D1.
Biochemistry 59 2896 2902 (2020)
PMID: 32574066 DOI: 10.1021/acs.biochem.0c00329

Abstact

Cytochrome P450s are among nature's most powerful catalysts. Their ability to activate molecular dioxygen to form high-valent ferryl intermediates (Compounds I and II) enables a wide array of chemistries ranging from simple epoxidations to more complicated C-H bond oxidations. Oxygen activation is achieved by reduction of the ferrous dioxygen complex, which requires the transfer of an electron from a redox partner and subsequent double protonation to yield a water molecule and a ferryl porphyrin π-cation radical (Compound I). Previous studies of the CYP101 family of cytochrome P450s demonstrated the importance of the conserved active site Asp25X residue in this protonation event, although its precise role is yet to be unraveled. To further explore the origin of protons in oxygen activation, we analyzed the effects of an Asp to Glu mutation at the 25X position in P450cam and in CYP101D1. This mutation inactivates P450cam but not CYP101D1. A series of mutagenic, crystallographic, kinetic, and molecular dynamics studies indicate that this mutation locks P450cam into a closed, inactive conformation. In CYP101D1, the D259E mutant changes the rate-limiting step to reduction of the P450-oxy complex, thus opening a window into the critical proton-coupled electron transfer step in P450 catalysis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures