6WG6 image
Deposition Date 2020-04-04
Release Date 2020-05-20
Last Version Date 2023-10-18
Entry Detail
PDB ID:
6WG6
Keywords:
Title:
Crystal structure of human SMC1-SMC3 hinge domain heterodimer in north-open conformation
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.54 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Structural maintenance of chromosomes protein
Chain IDs:A, C, E, G, I, K
Chain Length:233
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Structural maintenance of chromosomes protein 3
Gene (Uniprot):SMC3
Chain IDs:B, D, F, H, J, L
Chain Length:256
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:poly(dT)
Chain IDs:M, N
Chain Length:10
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM structure of the human cohesin-NIPBL-DNA complex.
Science 368 1454 1459 (2020)
PMID: 32409525 DOI: 10.1126/science.abb0981

Abstact

As a ring-shaped adenosine triphosphatase (ATPase) machine, cohesin organizes the eukaryotic genome by extruding DNA loops and mediates sister chromatid cohesion by topologically entrapping DNA. How cohesin executes these fundamental DNA transactions is not understood. Using cryo-electron microscopy (cryo-EM), we determined the structure of human cohesin bound to its loader NIPBL and DNA at medium resolution. Cohesin and NIPBL interact extensively and together form a central tunnel to entrap a 72-base pair DNA. NIPBL and DNA promote the engagement of cohesin's ATPase head domains and ATP binding. The hinge domains of cohesin adopt an "open washer" conformation and dock onto the STAG1 subunit. Our structure explains the synergistic activation of cohesin by NIPBL and DNA and provides insight into DNA entrapment by cohesin.

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