6WG5 image
Deposition Date 2020-04-04
Release Date 2020-08-12
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6WG5
Keywords:
Title:
Human ectonucleoside triphosphate diphosphohydrolase 4 (ENTPD4, NTPDase 4)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ectonucleoside triphosphate diphosphohydrolase 4
Gene (Uniprot):ENTPD4
Chain IDs:A
Chain Length:512
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Crystal structure of the nucleotide-metabolizing enzyme NTPDase4.
Protein Sci. 29 2054 2061 (2020)
PMID: 32767432 DOI: 10.1002/pro.3926

Abstact

The ecto-nucleoside triphosphate diphosphohydrolases (NTPDases) are a family of enzymes found on the cell surface and in the lumen of certain organelles, that are major regulators of purinergic signaling. Their intracellular roles, however, have not been clearly defined. NTPDase4 (UDPase, ENTPD4) is a Golgi protein potentially involved in nucleotide recycling as part of protein glycosylation, and is also found in lysosomes, where its purpose is unknown. To further our understanding of NTPDase4 function, we determined its crystal structure. The enzyme adopts a wide open, inactive conformation. Differences in the nucleotide-binding site relative to its homologs could account for its substrate selectivity. The putative membrane-interacting loop of cell-surface NTPDases is drastically altered in NTPDase4, potentially affecting its interdomain dynamics at the Golgi membrane.

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Primary Citation of related structures