6WG3 image
Deposition Date 2020-04-04
Release Date 2020-05-20
Last Version Date 2024-03-06
Entry Detail
PDB ID:
6WG3
Keywords:
Title:
Cryo-EM structure of human Cohesin-NIPBL-DNA complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
5.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Structural maintenance of chromosomes protein 1A
Gene (Uniprot):SMC1A
Mutations:E1157Q
Chain IDs:A
Chain Length:1233
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Structural maintenance of chromosomes protein 3
Gene (Uniprot):SMC3
Chain IDs:B
Chain Length:1217
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Double-strand-break repair protein rad21 homolog
Gene (Uniprot):RAD21
Mutations:R172A, D279A, R450A
Chain IDs:C
Chain Length:631
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cohesin subunit SA-1
Gene (Uniprot):STAG1
Chain IDs:D
Chain Length:1272
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nipped-B-like protein
Gene (Uniprot):NIPBL
Chain IDs:E
Chain Length:1652
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (51-MER)
Chain IDs:F
Chain Length:51
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (51-MER)
Chain IDs:G
Chain Length:51
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM structure of the human cohesin-NIPBL-DNA complex.
Science 368 1454 1459 (2020)
PMID: 32409525 DOI: 10.1126/science.abb0981

Abstact

As a ring-shaped adenosine triphosphatase (ATPase) machine, cohesin organizes the eukaryotic genome by extruding DNA loops and mediates sister chromatid cohesion by topologically entrapping DNA. How cohesin executes these fundamental DNA transactions is not understood. Using cryo-electron microscopy (cryo-EM), we determined the structure of human cohesin bound to its loader NIPBL and DNA at medium resolution. Cohesin and NIPBL interact extensively and together form a central tunnel to entrap a 72-base pair DNA. NIPBL and DNA promote the engagement of cohesin's ATPase head domains and ATP binding. The hinge domains of cohesin adopt an "open washer" conformation and dock onto the STAG1 subunit. Our structure explains the synergistic activation of cohesin by NIPBL and DNA and provides insight into DNA entrapment by cohesin.

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Primary Citation of related structures