6WFY image
Entry Detail
PDB ID:
6WFY
Keywords:
Title:
Crystal structure of Fab224 in complex with NPNA4 peptide from circumsporozoite protein
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2020-04-04
Release Date:
2020-07-29
Method Details:
Experimental Method:
Resolution:
1.23 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fab224 heavy chain
Chain IDs:A (auth: H)
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Fab224 light chain
Chain IDs:B (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:NPNA4 peptide
Chain IDs:C (auth: P)
Chain Length:18
Number of Molecules:1
Biological Source:Plasmodium falciparum
Primary Citation
Structural and biophysical correlation of anti-NANP antibodies with in vivo protection against P. falciparum.
Nat Commun 12 1063 1063 (2021)
PMID: 33594061 DOI: 10.1038/s41467-021-21221-4

Abstact

The most advanced P. falciparum circumsporozoite protein-based malaria vaccine, RTS,S/AS01 (RTS,S), confers partial protection but with antibody titers that wane relatively rapidly, highlighting the need to elicit more potent and durable antibody responses. Here, we elucidate crystal structures, binding affinities and kinetics, and in vivo protection of eight anti-NANP antibodies derived from an RTS,S phase 2a trial and encoded by three different heavy-chain germline genes. The structures reinforce the importance of homotypic Fab-Fab interactions in protective antibodies and the overwhelmingly dominant preference for a germline-encoded aromatic residue for recognition of the NANP motif. In this study, antibody apparent affinity correlates best with protection in an in vivo mouse model, with the more potent antibodies also recognizing epitopes with repeating secondary structural motifs of type I β- and Asn pseudo 310 turns; such insights can be incorporated into design of more effective immunogens and antibodies for passive immunization.

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