6WF0 image
Deposition Date 2020-04-03
Release Date 2020-11-25
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6WF0
Title:
Crystal Structure of Broadly Neutralizing Antibody 3I14 Bound to the Influenza A H3 Hemagglutinin
Biological Source:
Source Organism:
Influenza A virus (Taxon ID: 11320)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.46 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:A
Chain Length:317
Number of Molecules:1
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:B
Chain Length:163
Number of Molecules:1
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:heavy chain
Chain IDs:C (auth: H)
Chain Length:235
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:light chain
Chain IDs:D (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Unique structural solution from a V H 3-30 antibody targeting the hemagglutinin stem of influenza A viruses.
Nat Commun 12 559 559 (2021)
PMID: 33495478 DOI: 10.1038/s41467-020-20879-6

Abstact

Broadly neutralizing antibodies (bnAbs) targeting conserved influenza A virus (IAV) hemagglutinin (HA) epitopes can provide valuable information for accelerating universal vaccine designs. Here, we report structural details for heterosubtypic recognition of HA from circulating and emerging IAVs by the human antibody 3I14. Somatic hypermutations play a critical role in shaping the HCDR3, which alone and uniquely among VH3-30 derived antibodies, forms contacts with five sub-pockets within the HA-stem hydrophobic groove. 3I14 light-chain interactions are also key for binding HA and contribute a large buried surface area spanning two HA protomers. Comparison of 3I14 to bnAbs from several defined classes provide insights to the bias selection of VH3-30 antibodies and reveals that 3I14 represents a novel structural solution within the VH3-30 repertoire. The structures reported here improve our understanding of cross-group heterosubtypic binding activity, providing the basis for advancing immunogen designs aimed at eliciting a broadly protective response to IAV.

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Primary Citation of related structures