ISDA

Entry Detail

PDB ID:

6WEB

Keywords:

HYDROLASE

Title:

Multi-Hit SFX using MHz XFEL sources

Biological Source:

Source Organism:

Gallus gallus

PDB Version:

Deposition Date:

2020-04-01

Release Date:

2021-10-13

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.10 Å

R-Value Free:

0.21

R-Value Work:

0.15

R-Value Observed:

0.15

Space Group:

P 43 21 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Lysozyme
Chain IDs:A
Chain Length:129
Number of Molecules:1
Biological Source:Gallus gallus

UniProt ID:P00698 Pfam ID:PF00062 EC:3.2.1.17

Ligand Molecules

ACT

EDO

Primary Citation

Megahertz pulse trains enable multi-hit serial femtosecond crystallography experiments at X-ray free electron lasers.

Holmes, S, Kirkwood, H.J, Bean, R, Giewekemeyer, K, Martin, A.V, Hadian-Jazi, M, Wiedorn, M.O, Oberthur, D, Marman, H, Adriano, L, Al-Qudami, N, Bajt, S, Barak, I, Bari, S, Bielecki, J, Brockhauser, S, Coleman, M.A, Cruz-Mazo, F, Danilevski, C, Dorner, K, Ganan-Calvo, A.M, Graceffa, R, Fanghor, H, Heymann, M, Frank, M, Kaukher, A, Kim, Y, Kobe, B, Knoska, J, Laurus, T, Letrun, R, Maia, L, Messerschmidt, M, Metz, M, Michelat, T, Mills, G, Molodtsov, S, Monteiro, D.C.F, Morgan, A.J, Munnich, A, Pena Murillo, G.E, Previtali, G, Round, A, Sato, T, Schubert, R, Schulz, J, Shelby, M, Seuring, C, Sellberg, J.A, Sikorski, M, Silenzi, A, Stern, S, Sztuk-Dambietz, J, Szuba, J, Trebbin, M, Vagovic, P, Ve, T, Weinhausen, B, Wrona, K, Xavier, P.L, Xu, C, Yefanov, O, Nugent, K.A, Chapman, H.N, Mancuso, A.P, Barty, A, Abbey, B, Darmanin, C, Wiedorn, M.O, Oberthur, D, Bean, R, Schubert, R, Werner, N, Abbey, B, Aepfelbacher, M, Adriano, L, Allahgholi, A, Al-Qudami, N, Andreasson, J, Aplin, S, Awel, S, Ayyer, K, Bajt, S, Barak, I, Bari, S, Bielecki, J, Botha, S, Boukhelef, D, Brehm, W, Brockhauser, S, Cheviakov, I, Coleman, M.A, Cruz-Mazo, F, Danilevski, C, Darmanin, C, Doak, R.B, Domaracky, M, Dorner, K, Du, Y, Fangohr, H, Fleckenstein, H, Frank, M, Fromme, P, Ganan-Calvo, A.M, Gevorkov, Y, Giewekemeyer, K, Ginn, H.M, Graafsma, H, Graceffa, R, Greiffenberg, D, Gumprecht, L, Gottlicher, P, Hajdu, J, Hauf, S, Heymann, M, Holmes, S, Horke, D.A, Hunter, M.S, Imlau, S, Kaukher, A, Kim, Y, Klyuev, A, Knoska, J, Kobe, B, Kuhn, M, Kupitz, C, Kupper, J, Lahey-Rudolph, J.M, Laurus, T, Le Cong, K, Letrun, R, Xavier, P.L, Maia, L, Maia, F.R.N.C, Mariani, V, Messerschmidt, M, Metz, M, Mezza, D, Michelat, T, Mills, G, Monteiro, D.C.F, Morgan, A, Muhlig, K, Munke, A, Munnich, A, Nette, J, Nugent, K.A, Nuguid, T, Orville, A.M, Pandey, S, Pena, G, Villanueva-Perez, P, Poehlsen, J, Previtali, G, Redecke, L, Riekehr, W.M, Rohde, H, Round, A, Safenreiter, T, Sarrou, I, Sato, T, Schmidt, M, Schmitt, B, Schonherr, R, Schulz, J, Sellberg, J.A, Seibert, M.M, Seuring, C, Shelby, M.L, Shoeman, R.L, Sikorski, M, Silenzi, A, Stan, C.A, Shi, X, Stern, S, Sztuk-Dambietz, J, Szuba, J, Tolstikova, A, Trebbin, M, Trunk, U, Vagovic, P, Ve, T, Weinhausen, B, White, T.A, Wrona, K, Xu, C, Yefanov, O, Zatsepin, N, Zhang, J, Perbandt, M, Mancuso, A.P, Betzel, C, Chapman, H, Barty, A, Yefanov, O, Oberthur, D, Bean, R, Wiedorn, M.O, Knoska, J, Pena, G, Awel, S, Gumprecht, L, Domaracky, M, Sarrou, I, Lourdu Xavier, P, Metz, M, Bajt, S, Mariani, V, Gevorkov, Y, White, T.A, Tolstikova, A, Villanueva-Perez, P, Seuring, C, Aplin, S, Estillore, A.D, Kupper, J, Klyuev, A, Kuhn, M, Laurus, T, Graafsma, H, Monteiro, D.C.F, Trebbin, M, Maia, F.R.N.C, Cruz-Mazo, F, Ganan-Calvo, A.M, Heymann, M, Darmanin, C, Abbey, B, Schmidt, M, Fromme, P, Giewekemeyer, K, Sikorski, M, Graceffa, R, Vagovic, P, Kluyver, T, Bergemann, M, Fangohr, H, Sztuk-Dambietz, J, Hauf, S, Raab, N, Bondar, V, Mancuso, A.P, Chapman, H, Barty, A.Show

Nat Commun 13 4708 4708 (2022)

PMID: 35953469 DOI: 10.1038/s41467-022-32434-6

Abstact

The European X-ray Free Electron Laser (XFEL) and Linac Coherent Light Source (LCLS) II are extremely intense sources of X-rays capable of generating Serial Femtosecond Crystallography (SFX) data at megahertz (MHz) repetition rates. Previous work has shown that it is possible to use consecutive X-ray pulses to collect diffraction patterns from individual crystals. Here, we exploit the MHz pulse structure of the European XFEL to obtain two complete datasets from the same lysozyme crystal, first hit and the second hit, before it exits the beam. The two datasets, separated by <1 µs, yield up to 2.1 Å resolution structures. Comparisons between the two structures reveal no indications of radiation damage or significant changes within the active site, consistent with the calculated dose estimates. This demonstrates MHz SFX can be used as a tool for tracking sub-microsecond structural changes in individual single crystals, a technique we refer to as multi-hit SFX.

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Primary Citation of related structures