6WB8 image
Entry Detail
PDB ID:
6WB8
EMDB ID:
Title:
Cryo-EM structure of PKD2 C331S disease variant
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-03-26
Release Date:
2020-04-22
Method Details:
Experimental Method:
Resolution:
3.24 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Polycystin-2
Mutations:C331S
Chain IDs:A, B, C, D
Chain Length:756
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular dysregulation of ciliary polycystin-2 channels caused by variants in the TOP domain.
Proc.Natl.Acad.Sci.USA 117 10329 10338 (2020)
PMID: 32332171 DOI: 10.1073/pnas.1920777117

Abstact

Genetic variants in PKD2 which encodes for the polycystin-2 ion channel are responsible for many clinical cases of autosomal dominant polycystic kidney disease (ADPKD). Despite our strong understanding of the genetic basis of ADPKD, we do not know how most variants impact channel function. Polycystin-2 is found in organelle membranes, including the primary cilium-an antennae-like structure on the luminal side of the collecting duct. In this study, we focus on the structural and mechanistic regulation of polycystin-2 by its TOP domain-a site with unknown function that is commonly altered by missense variants. We use direct cilia electrophysiology, cryogenic electron microscopy, and superresolution imaging to determine that variants of the TOP domain finger 1 motif destabilizes the channel structure and impairs channel opening without altering cilia localization and channel assembly. Our findings support the channelopathy classification of PKD2 variants associated with ADPKD, where polycystin-2 channel dysregulation in the primary cilia may contribute to cystogenesis.

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Disease

Primary Citation of related structures