6WAV image
Entry Detail
PDB ID:
6WAV
Keywords:
Title:
Crystal structure of PHF1 in complex with H3K36me3 substitution
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-03-26
Release Date:
2020-08-26
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.24
R-Value Work:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:PHD finger protein 1
Chain IDs:A, B, C, D
Chain Length:61
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H3.1
Chain IDs:E, F, G, H
Chain Length:12
Number of Molecules:4
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
M3L E LYS modified residue
Primary Citation
Structural basis for histone variant H3tK27me3 recognition by PHF1 and PHF19.
Elife 9 ? ? (2020)
PMID: 32869745 DOI: 10.7554/eLife.58675

Abstact

The Polycomb repressive complex 2 (PRC2) is a multicomponent histone H3K27 methyltransferase complex, best known for silencing the Hox genes during embryonic development. The Polycomb-like proteins PHF1, MTF2, and PHF19 are critical components of PRC2 by stimulating its catalytic activity in embryonic stem cells. The Tudor domains of PHF1/19 have been previously shown to be readers of H3K36me3 in vitro. However, some other studies suggest that PHF1 and PHF19 co-localize with the H3K27me3 mark but not H3K36me3 in cells. Here, we provide further evidence that PHF1 co-localizes with H3t in testis and its Tudor domain preferentially binds to H3tK27me3 over canonical H3K27me3 in vitro. Our complex structures of the Tudor domains of PHF1 and PHF19 with H3tK27me3 shed light on the molecular basis for preferential recognition of H3tK27me3 by PHF1 and PHF19 over canonical H3K27me3, implicating that H3tK27me3 might be a physiological ligand of PHF1/19.

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Primary Citation of related structures