6W9L image
Entry Detail
PDB ID:
6W9L
Keywords:
Title:
Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with deacetylated deflazacort and PGC1a coregulator fragment
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2020-03-23
Release Date:
2020-11-04
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glucocorticoid Receptor
Chain IDs:A
Chain Length:249
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Chain IDs:B
Chain Length:12
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Disruption of a key ligand-H-bond network drives dissociative properties in vamorolone for Duchenne muscular dystrophy treatment.
Proc.Natl.Acad.Sci.USA 117 24285 24293 (2020)
PMID: 32917814 DOI: 10.1073/pnas.2006890117

Abstact

Duchenne muscular dystrophy is a genetic disorder that shows chronic and progressive damage to skeletal and cardiac muscle leading to premature death. Antiinflammatory corticosteroids targeting the glucocorticoid receptor (GR) are the current standard of care but drive adverse side effects such as deleterious bone loss. Through subtle modification to a steroidal backbone, a recently developed drug, vamorolone, appears to preserve beneficial efficacy but with significantly reduced side effects. We use combined structural, biophysical, and biochemical approaches to show that loss of a receptor-ligand hydrogen bond drives these remarkable therapeutic effects. Moreover, vamorolone uniformly weakens coactivator associations but not corepressor associations, implicating partial agonism as the main driver of its dissociative properties. Additionally, we identify a critical and evolutionarily conserved intramolecular network connecting the ligand to the coregulator binding surface. Interruption of this allosteric network by vamorolone selectively reduces GR-driven transactivation while leaving transrepression intact. Our results establish a mechanistic understanding of how vamorolone reduces side effects, guiding the future design of partial agonists as selective GR modulators with an improved therapeutic index.

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