6W98 image
Deposition Date 2020-03-22
Release Date 2020-05-13
Last Version Date 2025-04-02
Entry Detail
PDB ID:
6W98
Title:
Single-Particle Cryo-EM Structure of Arabinofuranosyltransferase AftD from Mycobacteria
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:F5/8 type C domain-containing protein
Chain IDs:A
Chain Length:1413
Number of Molecules:1
Biological Source:Mycobacteroides abscessus subsp. abscessus
Polymer Type:polypeptide(L)
Molecule:Acyl carrier protein
Gene (Uniprot):acpP
Chain IDs:B
Chain Length:78
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Primary Citation

Abstact

Mycobacterium tuberculosis causes tuberculosis, a disease that kills over 1 million people each year. Its cell envelope is a common antibiotic target and has a unique structure due, in part, to two lipidated polysaccharides-arabinogalactan and lipoarabinomannan. Arabinofuranosyltransferase D (AftD) is an essential enzyme involved in assembling these glycolipids. We present the 2.9-Å resolution structure of M. abscessus AftD, determined by single-particle cryo-electron microscopy. AftD has a conserved GT-C glycosyltransferase fold and three carbohydrate-binding modules. Glycan array analysis shows that AftD binds complex arabinose glycans. Additionally, AftD is non-covalently complexed with an acyl carrier protein (ACP). 3.4- and 3.5-Å structures of a mutant with impaired ACP binding reveal a conformational change, suggesting that ACP may regulate AftD function. Mutagenesis experiments using a conditional knockout constructed in M. smegmatis confirm the essentiality of the putative active site and the ACP binding for AftD function.

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Primary Citation of related structures