6W8W image
Deposition Date 2020-03-21
Release Date 2020-07-08
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6W8W
Keywords:
TRANSFERASE/DNA
Title:
Crystal structure of mouse DNMT1 in complex with CCG DNA
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.00 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
6W8W validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA (cytosine-5)-methyltransferase 1
Gene (Uniprot):Dnmt1
Chain IDs:A, B
Chain Length:873
Number of Molecules:2
Biological Source:Mus musculus
UniProt ID:P13864 Pfam ID:PF01426, PF00145 EC:2.1.1.37
Polymer Type:polydeoxyribonucleotide
Molecule:CCG DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3')
Chain IDs:C, D (auth: E)
Chain Length:12
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:CCG DNA (5'-D(*CP*CP*TP*TP*CP*(C49)P*GP*TP*AP*AP*GP*T)-3')
Chain IDs:E (auth: D), F
Chain Length:12
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
SAH
ZN
Primary Citation
DNMT1 activity, base flipping mechanism and genome-wide DNA methylation are regulated by the DNA sequence context
Nat Commun ? ? ? (2020)
Primary Citation of related structures
6W8W