ISDA

Entry Detail

PDB ID:

6W8V

Keywords:

TRANSFERASE/DNA

Title:

Crystal structure of mouse DNMT1 in complex with ACG DNA

Biological Source:

Source Organism:

Mus musculus, synthetic construct

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2020-03-21

Release Date:

2020-07-08

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.12 Å

R-Value Free:

0.27

R-Value Work:

0.24

R-Value Observed:

0.24

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA (cytosine-5)-methyltransferase 1
Chain IDs:A, B
Chain Length:873
Number of Molecules:2
Biological Source:Mus musculus

UniProt ID:P13864 Pfam ID:PF01426, PF00145 EC:2.1.1.37

Polymer Type:polydeoxyribonucleotide
Description:ACG DNA (5'-D(*CP*CP*TP*TP*CP*(5CM)P*GP*TP*AP*AP*GP*T)-3')
Chain IDs:C, D (auth: E)
Chain Length:12
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Description:ACG DNA (5'-D(*AP*CP*TP*TP*AP*(C49)P*GP*GP*AP*AP*GP*G)-3')
Chain IDs:E (auth: D), F
Chain Length:12
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules

SAH

Primary Citation

DNMT1 activity, base flipping mechanism and genome-wide DNA methylation are regulated by the DNA sequence context

Adam, S, Anteneh, H, Hornisch, M, Wagner, V, Lu, J, Radde, N.E, Bashtrykov, P, Song, J, Jeltsch, A.Show

Nat Commun ? ? ? (2020)

Primary Citation of related structures