ISDA

Deposition Date 2020-03-19

Release Date 2021-03-24

Last Version Date 2023-10-18

Entry Detail

PDB ID:

6W7L

Keywords:

HYDROLASE/HYDROLASE Inhibitor

Title:

Structure of Tdp1 catalytic domain in complex with inhibitor XZ632p

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.86 Å

R-Value Free:

0.21

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tyrosyl-DNA phosphodiesterase 1
Gene (Uniprot):TDP1
Chain IDs:A, B
Chain Length:461
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q9NUW8 Pfam ID:PF06087 EC:3.1.4.1

Ligand Molecules

EDO

TGV

Primary Citation

Small molecule microarray identifies inhibitors of tyrosyl-DNA phosphodiesterase 1 that simultaneously access the catalytic pocket and two substrate binding sites

Zhao, X.Z, Kiselev, E, Lountos, G.T, Wang, W, Tropea, J.E, Needle, D, Hilimire, T.A, Schneekloth, J.S, Waugh, D.S, Pommier, Y, Burke, T.R.Show

Chemical Science 12 3876 3884 (2021)

DOI: 10.1039/D0SC05411A

Primary Citation of related structures