ISDA

Entry Detail

PDB ID:

6W7K

Keywords:

HYDROLASE/HYDROLASE Inhibitor

Title:

Structure of Tdp1 catalytic domain in complex with inhibitor XZ634p

Biological Source:

Source Organism:

Homo sapiens

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2020-03-19

Release Date:

2021-03-24

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.70 Å

R-Value Free:

0.21

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Tyrosyl-DNA phosphodiesterase 1
Chain IDs:A, B
Chain Length:461
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q9NUW8 Pfam ID:PF06087 EC:3.1.4.1

Ligand Molecules

EDO

TG7

Primary Citation

Small molecule microarray identifies inhibitors of tyrosyl-DNA phosphodiesterase 1 that simultaneously access the catalytic pocket and two substrate binding sites

Zhao, X.Z, Kiselev, E, Lountos, G.T, Wang, W, Tropea, J.E, Needle, D, Hilimire, T.A, Schneekloth, J.S, Waugh, D.S, Pommier, Y, Burke, T.R.Show

Chemical Science 12 3876 3884 (2021)

DOI: 10.1039/D0SC05411A

Primary Citation of related structures