6W5N image
Entry Detail
PDB ID:
6W5N
EMDB ID:
Title:
Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class05)
Biological Source:
PDB Version:
Deposition Date:
2020-03-13
Release Date:
2021-03-31
Method Details:
Experimental Method:
Resolution:
6.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Retinoblastoma-binding protein 5
Chain IDs:A
Chain Length:538
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:WD repeat-containing protein 5
Chain IDs:B
Chain Length:313
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone-lysine N-methyltransferase 2A
Chain IDs:C
Chain Length:209
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Set1/Ash2 histone methyltransferase complex subunit ASH2
Chain IDs:D
Chain Length:534
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H3.2
Chain IDs:E (auth: G), I (auth: K)
Chain Length:136
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Histone H4
Chain IDs:F (auth: H), J (auth: L)
Chain Length:103
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Histone H2A type 1
Chain IDs:G (auth: I), K (auth: M)
Chain Length:129
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Histone H2B 1.1
Chain IDs:H (auth: J), L (auth: N)
Chain Length:123
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polydeoxyribonucleotide
Description:DNA (147-MER)
Chain IDs:M (auth: O)
Chain Length:147
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (147-MER)
Chain IDs:N (auth: P)
Chain Length:147
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin.
Nat Commun 12 2953 2953 (2021)
PMID: 34012049 DOI: 10.1038/s41467-021-23268-9

Abstact

Recent cryo-EM structures show the highly dynamic nature of the MLL1-NCP (nucleosome core particle) interaction. Functional implication and regulation of such dynamics remain unclear. Here we show that DPY30 and the intrinsically disordered regions (IDRs) of ASH2L work together in restricting the rotational dynamics of the MLL1 complex on the NCP. We show that DPY30 binding to ASH2L leads to stabilization and integration of ASH2L IDRs into the MLL1 complex and establishes new ASH2L-NCP contacts. The significance of ASH2L-DPY30 interactions is demonstrated by requirement of both ASH2L IDRs and DPY30 for dramatic increase of processivity and activity of the MLL1 complex. This DPY30 and ASH2L-IDR dependent regulation is NCP-specific and applies to all members of the MLL/SET1 family of enzymes. We further show that DPY30 is causal for de novo establishment of H3K4me3 in ESCs. Our study provides a paradigm of how H3K4me3 is regulated on chromatin and how H3K4me3 heterogeneity can be modulated by ASH2L IDR interacting proteins.

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Primary Citation of related structures