6W5H image
Deposition Date 2020-03-13
Release Date 2020-09-30
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6W5H
Title:
1.85 A resolution structure of Norovirus 3CL protease in complex with inhibitor 5d
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:3C-LIKE PROTEASE
Gene (Uniprot):ORF1
Chain IDs:A, B, C, D
Chain Length:187
Number of Molecules:4
Biological Source:Norwalk virus (strain GI/Human/United States/Norwalk/1968)
Ligand Molecules
Peptide-like Molecules
PRD_002452
Primary Citation
Structure-Guided Optimization of Dipeptidyl Inhibitors of Norovirus 3CL Protease.
J.Med.Chem. 63 11945 11963 (2020)
PMID: 32945669 DOI: 10.1021/acs.jmedchem.0c01252

Abstact

Acute gastroenteritis caused by noroviruses has a major impact on public health worldwide in terms of morbidity, mortality, and economic burden. The disease impacts most severely immunocompromised patients, the elderly, and children. The current lack of approved vaccines and small-molecule therapeutics for the treatment and prophylaxis of norovirus infections underscores the need for the development of norovirus-specific drugs. The studies described herein entail the use of the gem-dimethyl moiety as a means of improving the pharmacological activity and physicochemical properties of a dipeptidyl series of transition state inhibitors of norovirus 3CL protease, an enzyme essential for viral replication. Several compounds were found to be potent inhibitors of the enzyme in biochemical and cell-based assays. The pharmacological activity and cellular permeability of the inhibitors were found to be sensitive to the location of the gem-dimethyl group.

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Primary Citation of related structures