6W52 image
Deposition Date 2020-03-12
Release Date 2020-11-11
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6W52
Keywords:
Title:
Prefusion RSV F bound by neutralizing antibody RSB1
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.74 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
I 21 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fusion glycoprotein F0
Gene (Uniprot):F
Chain IDs:A
Chain Length:82
Number of Molecules:1
Biological Source:Human respiratory syncytial virus A (strain A2)
Polymer Type:polypeptide(L)
Molecule:Fusion glycoprotein F1 fused with Fibritin trimerization domain
Chain IDs:B
Chain Length:414
Number of Molecules:1
Biological Source:Human respiratory syncytial virus A, Escherichia phage T2
Polymer Type:polypeptide(L)
Molecule:RSB1 Fab Heavy Chain
Chain IDs:C (auth: H)
Chain Length:283
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:RSB1 Fab Light Chain
Chain IDs:D (auth: L)
Chain Length:236
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Convergent structural features of respiratory syncytial virus neutralizing antibodies and plasticity of the site V epitope on prefusion F.
Plos Pathog. 16 e1008943 e1008943 (2020)
PMID: 33137810 DOI: 10.1371/journal.ppat.1008943

Abstact

Respiratory syncytial virus (RSV) is a global public health burden for which no licensed vaccine exists. To aid vaccine development via increased understanding of the protective antibody response to RSV prefusion glycoprotein F (PreF), we performed structural and functional studies using the human neutralizing antibody (nAb) RSB1. The crystal structure of PreF complexed with RSB1 reveals a conformational, pre-fusion specific site V epitope with a unique cross-protomer binding mechanism. We identify shared structural features between nAbs RSB1 and CR9501, elucidating for the first time how diverse germlines obtained from different subjects can develop convergent molecular mechanisms for recognition of the same PreF site of vulnerability. Importantly, RSB1-like nAbs were induced upon immunization with PreF in naturally-primed cattle. Together, this work reveals new details underlying the immunogenicity of site V and further supports PreF-based vaccine development efforts.

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Primary Citation of related structures