6W51 image
Deposition Date 2020-03-12
Release Date 2021-03-17
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6W51
Keywords:
Title:
Structure of the antibody fragment H2 in complex with HLA-A*02:01/p53R175H
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.53 Å
R-Value Free:
0.28
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MHC class I antigen
Chain IDs:A, D, G, J
Chain Length:296
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B, E, H, K
Chain Length:119
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cellular tumor antigen p53 peptide
Gene (Uniprot):TP53
Mutations:R175H
Chain IDs:C, F, I, L
Chain Length:9
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin heavy chain H2
Chain IDs:M, O, Q, S
Chain Length:223
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin light chain H2
Chain IDs:N, P, R, T
Chain Length:215
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

TP53 (tumor protein p53) is the most commonly mutated cancer driver gene, but drugs that target mutant tumor suppressor genes, such as TP53, are not yet available. Here, we describe the identification of an antibody highly specific to the most common TP53 mutation (R175H, in which arginine at position 175 is replaced with histidine) in complex with a common human leukocyte antigen-A (HLA-A) allele on the cell surface. We describe the structural basis of this specificity and its conversion into an immunotherapeutic agent: a bispecific single-chain diabody. Despite the extremely low p53 peptide-HLA complex density on the cancer cell surface, the bispecific antibody effectively activated T cells to lyse cancer cells that presented the neoantigen in vitro and in mice. This approach could in theory be used to target cancers containing mutations that are difficult to target in conventional ways.

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Primary Citation of related structures