6W4X image
Entry Detail
PDB ID:
6W4X
EMDB ID:
Keywords:
Title:
Holocomplex of E. coli class Ia ribonucleotide reductase with GDP and TTP
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2020-03-11
Release Date:
2020-04-08
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ribonucleoside-diphosphate reductase 1 subunit alpha
Chain IDs:A, B
Chain Length:761
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Description:Ribonucleoside-diphosphate reductase 1 subunit beta
Chain IDs:C, D
Chain Length:376
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FY3 C TYR modified residue
Primary Citation
Structure of a trapped radical transfer pathway within a ribonucleotide reductase holocomplex.
Science 368 424 427 (2020)
PMID: 32217749 DOI: 10.1126/science.aba6794

Abstact

Ribonucleotide reductases (RNRs) are a diverse family of enzymes that are alone capable of generating 2'-deoxynucleotides de novo and are thus critical in DNA biosynthesis and repair. The nucleotide reduction reaction in all RNRs requires the generation of a transient active site thiyl radical, and in class I RNRs, this process involves a long-range radical transfer between two subunits, α and β. Because of the transient subunit association, an atomic resolution structure of an active α2β2 RNR complex has been elusive. We used a doubly substituted β2, E52Q/(2,3,5)-trifluorotyrosine122-β2, to trap wild-type α2 in a long-lived α2β2 complex. We report the structure of this complex by means of cryo-electron microscopy to 3.6-angstrom resolution, allowing for structural visualization of a 32-angstrom-long radical transfer pathway that affords RNR activity.

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Primary Citation of related structures