6W4K image
Deposition Date 2020-03-11
Release Date 2020-10-21
Last Version Date 2023-10-18
Entry Detail
PDB ID:
6W4K
Keywords:
Title:
Crystal structure of Lysine Specific Demethylase 1 (LSD1) with CC-90011
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.93 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysine-specific histone demethylase 1A
Gene (Uniprot):KDM1A
Chain IDs:A
Chain Length:659
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:REST corepressor 1
Gene (Uniprot):RCOR1
Chain IDs:B
Chain Length:132
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Discovery of CC-90011: A Potent and Selective Reversible Inhibitor of Lysine Specific Demethylase 1 (LSD1).
J.Med.Chem. 63 14522 14529 (2020)
PMID: 33034194 DOI: 10.1021/acs.jmedchem.0c00978

Abstact

Histone demethylase LSDl (KDMlA) belongs to the flavin adenine dinucleotide (FAD) dependent family of monoamine oxidases and is vital in regulation of mammalian biology. Dysregulation and overexpression of LSD1 are hallmarks of a number of human diseases, particularly cancers that are characterized as morphologically poorly differentiated. As such, inhibitors of LSD1 have potential to be beneficial as a cancer therapy. The most clinically advanced inhibitors of LSDl are covalent inhibitors derived from tranylcypromine (TCP). Herein, we report the discovery of a novel series of reversible and selective LSDl inhibitors. Exploration of structure-activity relationships (SARs) and optimization of ADME properties resulted in the identification of clinical candidate CC-90011. CC-90011 exhibits potent on-target induction of cellular differentiation in acute myeloid leukemia (AML) and small cell lung cancer (SCLC) cell lines, and antitumor efficacy in patient-derived xenograft (PDX) SCLC models. CC-90011 is currently in phase 2 trials in patients with first line, extensive stage SCLC (ClinicalTrials.gov identifier: NCT03850067).

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Primary Citation of related structures