6W35 image
Deposition Date 2020-03-09
Release Date 2020-07-08
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6W35
Title:
A new Autotaxin Inhibitor for the Treatment of Idiopathic Pulmonary Fibrosis: A Clinical Candidate Discovered Using DNA-Encoded Chemistry
Biological Source:
Source Organism:
Pan troglodytes (Taxon ID: 9598)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.98 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ectonucleotide pyrophosphatase/phosphodiesterase 2
Gene (Uniprot):ENPP2
Mutations:N298H,S552N,Q620E,I641V
Chain IDs:A
Chain Length:818
Number of Molecules:1
Biological Source:Pan troglodytes
Primary Citation
Novel Autotaxin Inhibitor for the Treatment of Idiopathic Pulmonary Fibrosis: A Clinical Candidate Discovered Using DNA-Encoded Chemistry.
J.Med.Chem. 63 7840 7856 (2020)
PMID: 32584034 DOI: 10.1021/acs.jmedchem.0c00688

Abstact

The activity of the secreted phosphodiesterase autotaxin produces the inflammatory signaling molecule LPA and has been associated with a number of human diseases including idiopathic pulmonary fibrosis (IPF). We screened a single DNA-encoded chemical library (DECL) of 225 million compounds and identified a series of potent inhibitors. Optimization of this series led to the discovery of compound 1 (X-165), a highly potent, selective, and bioavailable small molecule. Cocrystallization of compound 1 with human autotaxin demonstrated that it has a novel binding mode occupying both the hydrophobic pocket and a channel near the autotaxin active site. Compound 1 inhibited the production of LPA in human and mouse plasma at nanomolar levels and showed efficacy in a mouse model of human lung fibrosis. After successfully completing IND-enabling studies, compound 1 was approved by the FDA for a Phase I clinical trial. These results demonstrate that DECL hits can be readily optimized into clinical candidates.

Legend

Protein

Chemical

Disease

Primary Citation of related structures