6W16 image
Deposition Date 2020-03-03
Release Date 2020-06-03
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6W16
Keywords:
Title:
Crystal structure of a human metapneumovirus monomeric fusion protein complexed with 458 Fab
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 65
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fusion glycoprotein F0,Envelope glycoprotein fusion
Gene (Uniprot):F
Chain IDs:A (auth: F)
Chain Length:539
Number of Molecules:1
Biological Source:Human metapneumovirus, Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:458 Fab heavy chain
Chain IDs:B (auth: H)
Chain Length:219
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:458 Fab light chain
Chain IDs:C (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Antibody recognition of the Pneumovirus fusion protein trimer interface.
Plos Pathog. 16 e1008942 e1008942 (2020)
PMID: 33035266 DOI: 10.1371/journal.ppat.1008942

Abstact

Human metapneumovirus (hMPV) is a leading cause of viral respiratory infection in children, and can cause severe lower respiratory tract infection in infants, the elderly, and immunocompromised patients. However, there remain no licensed vaccines or specific treatments for hMPV infection. Although the hMPV fusion (F) protein is the sole target of neutralizing antibodies, the immunological properties of hMPV F remain poorly understood. To further define the humoral immune response to the hMPV F protein, we isolated two new human monoclonal antibodies (mAbs), MPV458 and MPV465. Both mAbs are neutralizing in vitro and were determined to target a unique antigenic site using competitive biolayer interferometry. We determined both MPV458 and MPV465 have higher affinity for monomeric hMPV F than trimeric hMPV F. MPV458 was co-crystallized with hMPV F, and the mAb primarily interacts with an alpha helix on the F2 region of the hMPV F protein. Surprisingly, the major epitope for MPV458 lies within the trimeric interface of the hMPV F protein, suggesting significant breathing of the hMPV F protein must occur for host immune recognition of the novel epitope. In addition, significant glycan interactions were observed with a somatically mutated light chain framework residue. The data presented identifies a novel epitope on the hMPV F protein for epitope-based vaccine design, and illustrates a new mechanism for human antibody neutralization of viral glycoproteins.

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Primary Citation of related structures