6VW1 image
Deposition Date 2020-02-18
Release Date 2020-03-04
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6VW1
Keywords:
Title:
Structure of SARS-CoV-2 chimeric receptor-binding domain complexed with its receptor human ACE2
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.68 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Angiotensin-converting enzyme 2
Gene (Uniprot):ACE2
Chain IDs:A, B
Chain Length:597
Number of Molecules:2
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SARS-CoV-2 chimeric RBD
Gene (Uniprot):S, S
Chain IDs:C (auth: E), D (auth: F)
Chain Length:217
Number of Molecules:2
Biological Source:Human SARS coronavirus, Severe acute respiratory syndrome coronavirus 2
Primary Citation
Structural basis of receptor recognition by SARS-CoV-2.
Nature 581 221 224 (2020)
PMID: 32225175 DOI: 10.1038/s41586-020-2179-y

Abstact

A novel severe acute respiratory syndrome (SARS)-like coronavirus (SARS-CoV-2) recently emerged and is rapidly spreading in humans, causing COVID-191,2. A key to tackling this pandemic is to understand the receptor recognition mechanism of the virus, which regulates its infectivity, pathogenesis and host range. SARS-CoV-2 and SARS-CoV recognize the same receptor-angiotensin-converting enzyme 2 (ACE2)-in humans3,4. Here we determined the crystal structure of the receptor-binding domain (RBD) of the spike protein of SARS-CoV-2 (engineered to facilitate crystallization) in complex with ACE2. In comparison with the SARS-CoV RBD, an ACE2-binding ridge in SARS-CoV-2 RBD has a more compact conformation; moreover, several residue changes in the SARS-CoV-2 RBD stabilize two virus-binding hotspots at the RBD-ACE2 interface. These structural features of SARS-CoV-2 RBD increase its ACE2-binding affinity. Additionally, we show that RaTG13, a bat coronavirus that is closely related to SARS-CoV-2, also uses human ACE2 as its receptor. The differences among SARS-CoV-2, SARS-CoV and RaTG13 in ACE2 recognition shed light on the potential animal-to-human transmission of SARS-CoV-2. This study provides guidance for intervention strategies that target receptor recognition by SARS-CoV-2.

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