6VVG image
Deposition Date 2020-02-17
Release Date 2021-02-03
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6VVG
Keywords:
Title:
Structure of the Cydia pomonella Granulovirus kinase, PK-1
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Arginine kinase
Gene (Uniprot):orf3
Chain IDs:A, B
Chain Length:279
Number of Molecules:2
Biological Source:Cydia pomonella granulosis virus (isolate Mexican)
Ligand Molecules
Primary Citation
Granulovirus PK-1 kinase activity relies on a side-to-side dimerization mode centered on the regulatory alpha C helix.
Nat Commun 12 1002 1002 (2021)
PMID: 33579933 DOI: 10.1038/s41467-021-21191-7

Abstact

The life cycle of Baculoviridae family insect viruses depends on the viral protein kinase, PK-1, to phosphorylate the regulatory protein, p6.9, to induce baculoviral genome release. Here, we report the crystal structure of Cydia pomenella granulovirus PK-1, which, owing to its likely ancestral origin among host cell AGC kinases, exhibits a eukaryotic protein kinase fold. PK-1 occurs as a rigid dimer, where an antiparallel arrangement of the αC helices at the dimer core stabilizes PK-1 in a closed, active conformation. Dimerization is facilitated by C-lobe:C-lobe and N-lobe:N-lobe interactions between protomers, including the domain-swapping of an N-terminal helix that crowns a contiguous β-sheet formed by the two N-lobes. PK-1 retains a dimeric conformation in solution, which is crucial for catalytic activity. Our studies raise the prospect that parallel, side-to-side dimeric arrangements that lock kinase domains in a catalytically-active conformation could function more broadly as a regulatory mechanism among eukaryotic protein kinases.

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