6VV5 image
Deposition Date 2020-02-17
Release Date 2020-02-26
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6VV5
Keywords:
Title:
Cryo-EM structure of porcine epidemic diarrhea virus (PEDV) spike protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:A, B, C
Chain Length:1356
Number of Molecules:3
Biological Source:Porcine epidemic diarrhea virus
Primary Citation
Structure and immune recognition of the porcine epidemic diarrhea virus spike protein.
Structure 29 385 392.e5 (2021)
PMID: 33378641 DOI: 10.1016/j.str.2020.12.003

Abstact

Porcine epidemic diarrhea virus (PEDV) is an alphacoronavirus responsible for significant morbidity and mortality in pigs. A key determinant of viral tropism and entry, the PEDV spike protein is a key target for the host antibody response and a good candidate for a protein-based vaccine immunogen. We used electron microscopy to evaluate the PEDV spike structure, as well as pig polyclonal antibody responses to viral infection. The structure of the PEDV spike reveals a configuration similar to that of HuCoV-NL63. Several PEDV protein-protein interfaces are mediated by non-protein components, including a glycan at Asn264 and two bound palmitoleic acid molecules. The polyclonal antibody response to PEDV infection shows a dominance of epitopes in the S1 region. This structural and immune characterization provides insights into coronavirus spike stability determinants and explores the immune landscape of viral spike proteins.

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Primary Citation of related structures