6VU3 image
Entry Detail
PDB ID:
6VU3
EMDB ID:
Keywords:
Title:
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Biological Source:
PDB Version:
Deposition Date:
2020-02-14
Release Date:
2020-09-02
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:A (auth: 0)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:B (auth: 1)
Chain Length:110
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:C (auth: 2)
Chain Length:94
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L24
Chain IDs:D (auth: 3)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:E (auth: 4)
Chain Length:94
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Description:NT DNA
Chain IDs:F (auth: 5)
Chain Length:36
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:T DNA
Chain IDs:G (auth: 6)
Chain Length:27
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Description:mRNA with 12 nt long spacer
Chain IDs:H (auth: 7)
Chain Length:29
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L10
Chain IDs:I (auth: 9)
Chain Length:148
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Description:E-site and A-site tRNA (fMet)
Chain IDs:J (auth: A), P (auth: B)
Chain Length:76
Number of Molecules:2
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit beta
Chain IDs:K (auth: AA)
Chain Length:1342
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:Transcription termination/antitermination protein NusG
Chain IDs:L (auth: AB)
Chain Length:181
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit alpha
Chain IDs:M (auth: AC), N (auth: AD)
Chain Length:230
Number of Molecules:2
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit beta'
Chain IDs:O (auth: AE)
Chain Length:1407
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S18
Chain IDs:Q (auth: C)
Chain Length:77
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Description:16S rRNA
Chain IDs:R (auth: D)
Chain Length:120
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S20
Chain IDs:S (auth: E)
Chain Length:62
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S21
Chain IDs:T (auth: F)
Chain Length:70
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S2
Chain IDs:U (auth: G)
Chain Length:66
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S1
Chain IDs:V (auth: H)
Chain Length:557
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S3
Chain IDs:W (auth: I)
Chain Length:56
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S4
Chain IDs:X (auth: J)
Chain Length:209
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S5
Chain IDs:Y (auth: K)
Chain Length:52
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S6
Chain IDs:Z (auth: L)
Chain Length:201
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S7
Chain IDs:AA (auth: M)
Chain Length:46
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S8
Chain IDs:BA (auth: N)
Chain Length:129
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S9
Chain IDs:CA (auth: O)
Chain Length:127
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S10
Chain IDs:DA (auth: P)
Chain Length:175
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S11
Chain IDs:EA (auth: Q)
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S12
Chain IDs:FA (auth: R)
Chain Length:149
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S14
Chain IDs:GA (auth: S)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S15
Chain IDs:HA (auth: T)
Chain Length:88
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S16
Chain IDs:IA (auth: U)
Chain Length:82
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S17
Chain IDs:JA (auth: V)
Chain Length:136
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S19
Chain IDs:KA (auth: W)
Chain Length:119
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S13
Chain IDs:LA (auth: X)
Chain Length:116
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L11
Chain IDs:MA (auth: Y)
Chain Length:141
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L7/L12
Chain IDs:NA (auth: Z)
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Description:23S rRNA
Chain IDs:OA (auth: a)
Chain Length:76
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:PA (auth: b)
Chain Length:76
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:QA (auth: c)
Chain Length:77
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Description:5S rRNA
Chain IDs:RA (auth: d)
Chain Length:120
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:SA (auth: e)
Chain Length:62
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:TA (auth: f)
Chain Length:70
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L31
Chain IDs:UA (auth: g)
Chain Length:66
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:VA (auth: h)
Chain Length:557
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:WA (auth: i)
Chain Length:56
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:XA (auth: j)
Chain Length:209
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:YA (auth: k)
Chain Length:52
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:ZA (auth: l)
Chain Length:201
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:AB (auth: m)
Chain Length:46
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:BB (auth: n)
Chain Length:129
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:CB (auth: o)
Chain Length:127
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:DB (auth: p)
Chain Length:175
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L36
Chain IDs:EB (auth: q)
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L9
Chain IDs:FB (auth: r)
Chain Length:149
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:GB (auth: s)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:HB (auth: t)
Chain Length:88
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:IB (auth: u)
Chain Length:82
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:JB (auth: v)
Chain Length:136
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:KB (auth: w)
Chain Length:119
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:LB (auth: x)
Chain Length:116
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:MB (auth: y)
Chain Length:141
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:NB (auth: z)
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Structural basis of transcription-translation coupling.
Science 369 1359 1365 (2020)
PMID: 32820061 DOI: 10.1126/science.abb5317

Abstact

In bacteria, transcription and translation are coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA) is coordinated with the movement of the first ribosome-translating mRNA. Coupling is modulated by the transcription factors NusG (which is thought to bridge RNAP and the ribosome) and NusA. Here, we report cryo-electron microscopy structures of Escherichia coli transcription-translation complexes (TTCs) containing different-length mRNA spacers between RNAP and the ribosome active-center P site. Structures of TTCs containing short spacers show a state incompatible with NusG bridging and NusA binding (TTC-A, previously termed "expressome"). Structures of TTCs containing longer spacers reveal a new state compatible with NusG bridging and NusA binding (TTC-B) and reveal how NusG bridges and NusA binds. We propose that TTC-B mediates NusG- and NusA-dependent transcription-translation coupling.

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