6VSB image
Deposition Date 2020-02-10
Release Date 2020-02-26
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6VSB
Keywords:
Title:
Prefusion 2019-nCoV spike glycoprotein with a single receptor-binding domain up
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.46 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutagens:K986P, V987P, R682G, R683S, R685S
Chain IDs:A, B, C
Chain Length:1288
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Ligand Molecules
Primary Citation
Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.
Science 367 1260 1263 (2020)
PMID: 32075877 DOI: 10.1126/science.abb2507

Abstact

The outbreak of a novel coronavirus (2019-nCoV) represents a pandemic threat that has been declared a public health emergency of international concern. The CoV spike (S) glycoprotein is a key target for vaccines, therapeutic antibodies, and diagnostics. To facilitate medical countermeasure development, we determined a 3.5-angstrom-resolution cryo-electron microscopy structure of the 2019-nCoV S trimer in the prefusion conformation. The predominant state of the trimer has one of the three receptor-binding domains (RBDs) rotated up in a receptor-accessible conformation. We also provide biophysical and structural evidence that the 2019-nCoV S protein binds angiotensin-converting enzyme 2 (ACE2) with higher affinity than does severe acute respiratory syndrome (SARS)-CoV S. Additionally, we tested several published SARS-CoV RBD-specific monoclonal antibodies and found that they do not have appreciable binding to 2019-nCoV S, suggesting that antibody cross-reactivity may be limited between the two RBDs. The structure of 2019-nCoV S should enable the rapid development and evaluation of medical countermeasures to address the ongoing public health crisis.

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Chemical

Disease

Primary Citation of related structures
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