6VRM image
Deposition Date 2020-02-08
Release Date 2020-06-17
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6VRM
Keywords:
Title:
T cell receptor-p53-HLA-A2 complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.61 Å
R-Value Free:
0.27
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MHC class I antigen
Chain IDs:A
Chain Length:293
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell receptor 12-6, alfa chain
Chain IDs:C (auth: D)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:TCR 12-6, beta chain
Chain IDs:D (auth: E)
Chain Length:246
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cellular tumor antigen p53 peptide
Gene (Uniprot):TP53
Mutations:R175H
Chain IDs:E (auth: P)
Chain Length:9
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Nat Commun 11 2908 2908 (2020)
PMID: 32518267 DOI: 10.1038/s41467-020-16755-y

Abstact

Adoptive cell therapy (ACT) with tumor-specific T cells can mediate cancer regression. The main target of tumor-specific T cells are neoantigens arising from mutations in self-proteins. Although the majority of cancer neoantigens are unique to each patient, and therefore not broadly useful for ACT, some are shared. We studied oligoclonal T-cell receptors (TCRs) that recognize a shared neoepitope arising from a driver mutation in the p53 oncogene (p53R175H) presented by HLA-A2. Here we report structures of wild-type and mutant p53-HLA-A2 ligands, as well as structures of three tumor-specific TCRs bound to p53R175H-HLA-A2. These structures reveal how a driver mutation in p53 rendered a self-peptide visible to T cells. The TCRs employ structurally distinct strategies that are highly focused on the mutation to discriminate between mutant and wild-type p53. The TCR-p53R175H-HLA-A2 complexes provide a framework for designing TCRs to improve potency for ACT without sacrificing specificity.

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Primary Citation of related structures