6VPX image
Deposition Date 2020-02-04
Release Date 2020-04-22
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6VPX
Title:
Nanodisc of full-length HIV-1 Envelope glycoprotein clone AMC011 in complex with one PGT151 Fab and three 10E8 Fabs
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
5.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Chain IDs:A, B (auth: E), C
Chain Length:465
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Chain IDs:D, E (auth: B), F
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:MPER peptide
Chain IDs:I (auth: G), L (auth: I), O (auth: J)
Chain Length:17
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody 10E8 Fab heavy chain
Chain IDs:G (auth: H), J (auth: K), M
Chain Length:129
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody 10E8 Fab light chain
Chain IDs:H (auth: L), K (auth: N), N (auth: O)
Chain Length:108
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody PGT151 Fab heavy chain
Chain IDs:P
Chain Length:134
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody PGT151 Fab light chain
Chain IDs:Q
Chain Length:109
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation

Abstact

Structural and functional studies of HIV envelope glycoprotein (Env) as a transmembrane protein have long been complicated by challenges associated with inherent flexibility of the molecule and the membrane-embedded hydrophobic regions. Here, we present approaches for incorporating full-length, wild-type HIV-1 Env, as well as C-terminally truncated and stabilized versions, into lipid assemblies, providing a modular platform for Env structural studies by single particle electron microscopy. We reconstitute a full-length Env clone into a nanodisc, complex it with a membrane-proximal external region (MPER) targeting antibody 10E8, and structurally define the full quaternary epitope of 10E8 consisting of lipid, MPER, and ectodomain contacts. By aligning this and other Env-MPER antibody complex reconstructions with the lipid bilayer, we observe evidence of Env tilting as part of the neutralization mechanism for MPER-targeting antibodies. We also adapt the platform toward vaccine design purposes by introducing stabilizing mutations that allow purification of unliganded Env with a peptidisc scaffold.

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Primary Citation of related structures