6VPN image
Deposition Date 2020-02-03
Release Date 2020-08-26
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6VPN
Title:
Solution structure of antifungal plant defensin PvD1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Knot1 domain-containing protein
Gene (Uniprot):PHAVU_005G071300g
Chain IDs:A
Chain Length:47
Number of Molecules:1
Biological Source:Phaseolus vulgaris
Ligand Molecules
Primary Citation
Synthesis, Structure, and Activity of the Antifungal Plant DefensinPvD1.
J.Med.Chem. 63 9391 9402 (2020)
PMID: 32787086 DOI: 10.1021/acs.jmedchem.0c00543

Abstact

Available treatments for invasive fungal infections have limitations, including toxicity and the emergence of resistant strains. Therefore, there is an urgent need for alternative solutions. Because of their unique mode of action and high selectivity, plant defensins (PDs) are worthy therapeutic candidates. Chemical synthesis remains a preferred method for the production of many peptide-based therapeutics. Given the relatively long sequence of PDs, as well as their complicated posttranslational modifications, the synthetic route can be considered challenging. Here, we describe a total synthesis of PvD1, the defensin from the common bean Phaseolus vulgaris. Analytical, structural, and functional characterization revealed that both natural and synthetic peptides fold into a canonical CSαβ motif stabilized by conserved disulfide bonds. Moreover, synthetic PvD1 retained the biological activity against four different Candida species and showed no toxicity in vivo. Adding the high resistance of synthetic PvD1 to proteolytic degradation, we claim that conditions are now met to consider PDs druggable biologicals.

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Primary Citation of related structures