6VOY image
Deposition Date 2020-02-01
Release Date 2020-07-01
Last Version Date 2025-05-28
Entry Detail
PDB ID:
6VOY
Title:
Cryo-EM structure of HTLV-1 instasome
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-binding protein 7d
Gene (Uniprot):sso7d
Mutagens:W24A
Chain IDs:A, B, C, D
Chain Length:390
Number of Molecules:4
Biological Source:Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2), Human T-cell leukemia virus type I
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform
Gene (Uniprot):PPP2R5C
Chain IDs:E, F
Chain Length:343
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3')
Chain IDs:G (auth: I), J (auth: L)
Chain Length:49
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (25-MER)
Chain IDs:H (auth: J), K (auth: M)
Chain Length:25
Number of Molecules:2
Biological Source:Human T-cell leukemia virus type I
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3')
Chain IDs:I (auth: K), L (auth: N)
Chain Length:20
Number of Molecules:2
Biological Source:Human T-cell leukemia virus type I
Primary Citation
Structural basis of host protein hijacking in human T-cell leukemia virus integration.
Nat Commun 11 3121 3121 (2020)
PMID: 32561747 DOI: 10.1038/s41467-020-16963-6

Abstact

Integration of the reverse-transcribed viral DNA into host chromosomes is a critical step in the life-cycle of retroviruses, including an oncogenic delta(δ)-retrovirus human T-cell leukemia virus type-1 (HTLV-1). Retroviral integrase forms a higher order nucleoprotein assembly (intasome) to catalyze the integration reaction, in which the roles of host factors remain poorly understood. Here, we use cryo-electron microscopy to visualize the HTLV-1 intasome at 3.7-Å resolution. The structure together with functional analyses reveal that the B56γ (B'γ) subunit of an essential host enzyme, protein phosphatase 2 A (PP2A), is repurposed as an integral component of the intasome to mediate HTLV-1 integration. Our studies reveal a key host-virus interaction underlying the replication of an important human pathogen and highlight divergent integration strategies of retroviruses.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback