6VMX image
Entry Detail
PDB ID:
6VMX
Keywords:
Title:
Structure of HD14 TCR in complex with HLA-B7 presenting an EBV epitope
Biological Source:
PDB Version:
Deposition Date:
2020-01-28
Release Date:
2020-07-29
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HLA class I histocompatibility antigen, B-7 alpha chain
Chain IDs:A, F
Chain Length:276
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B, G
Chain Length:100
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Epstein-Barr nuclear antigen 3
Chain IDs:C, H
Chain Length:9
Number of Molecules:2
Biological Source:Epstein-Barr virus (strain B95-8)
Polymer Type:polypeptide(L)
Description:HD14 alpha chain
Chain IDs:D, I
Chain Length:203
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:HD14 beta chain
Chain IDs:E, J
Chain Length:243
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
A Shared TCR Bias toward an Immunogenic EBV Epitope Dominates in HLA-B*07:02-Expressing Individuals.
J Immunol. 205 1524 1534 (2020)
PMID: 32817371 DOI: 10.4049/jimmunol.2000249

Abstact

EBV is one of the most common viruses found in humans and is prototypic of a persistent viral infection characterized by periods of latency. Across many HLA class I molecules, the latent-specific CD8+ T cell response is focused on epitopes derived from the EBNA-3 protein family. In the case of HLA-B*07:02 restriction, a highly frequent class I allele, the T cell response is dominated by an epitope spanning residues 379-387 of EBNA-3 (RPPIFIRRL [EBVRPP]). However, little is known about either the TCR repertoire specific for this epitope or the molecular basis for this observed immunodominance. The EBVRPP CD8+ T cell response was common among both EBV-seropositive HLA-B*07:02+ healthy and immunocompromised individuals. Similar TCRs were identified in EBVRPP-specific CD8+ T cell repertoires across multiple HLA-B7+ individuals, indicating a shared Ag-driven bias in TCR usage. In particular, TRBV4-1 and TRAV38 usage was observed in five out of six individuals studied. In this study, we report the crystal structure of a TRBV4-1+ TCR-HLA-B*07:02/EBVRPP complex, which provides a molecular basis for the observed TRBV4-1 bias. These findings enhance our understanding of the CD8+ T cell response toward a common EBV determinant in HLA-B*07:02+ individuals.

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