6VMK image
Deposition Date 2020-01-28
Release Date 2021-02-03
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6VMK
Keywords:
HYDROLASE/IMMUNE SYSTEM
Title:
Crystal structure of human Complement Factor D with anti-Factor D Fab 20D12
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Cricetulus griseus
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.01 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 2 2 2
6VMK validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fab Y49R light chain
Chain IDs:B (auth: L), E (auth: A), H (auth: D), K (auth: G), N (auth: J), Q (auth: O), T (auth: R), W (auth: U), Z (auth: Y), CA (auth: b), FA (auth: e), IA (auth: h), LA (auth: k), OA (auth: n), RA (auth: q), UA (auth: t)
Chain Length:228
Number of Molecules:16
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab Y49R heavy chain
Chain IDs:C (auth: M), F (auth: B), I (auth: E), L (auth: H), O (auth: K), R (auth: P), U (auth: S), X (auth: V), AA (auth: Z), DA (auth: c), GA (auth: f), JA (auth: i), MA (auth: l), PA (auth: o), SA (auth: r), VA (auth: u)
Chain Length:223
Number of Molecules:16
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Complement factor D
Gene (Uniprot):CFD
Chain IDs:A (auth: W), D (auth: C), G (auth: F), J (auth: I), M (auth: N), P (auth: Q), S (auth: T), V (auth: X), Y (auth: a), BA (auth: d), EA (auth: g), HA (auth: j), KA (auth: m), NA (auth: p), QA (auth: s), TA (auth: v)
Chain Length:228
Number of Molecules:16
Biological Source:Homo sapiens
UniProt ID:P00746 Pfam ID:PF00089 EC:3.4.21.46
Ligand Molecules
GOL
SO4
Primary Citation
Crystal structure of human Complement Factor D with anti-Factor D Fab 20D12
To Be Published ? ? ? (?)
Primary Citation of related structures
6VMK