6VMG image
Deposition Date 2020-01-27
Release Date 2020-09-09
Last Version Date 2024-03-06
Entry Detail
PDB ID:
6VMG
Title:
Chloroplast ATP synthase (O3, CF1FO)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
6.46 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit alpha, chloroplastic
Gene (Uniprot):atpA
Chain IDs:H (auth: A), J (auth: C), L (auth: B)
Chain Length:507
Number of Molecules:3
Biological Source:Spinacia oleracea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit beta, chloroplastic
Gene (Uniprot):atpB
Chain IDs:I (auth: F), K (auth: E), M (auth: D)
Chain Length:498
Number of Molecules:3
Biological Source:Spinacia oleracea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit b, chloroplastic
Gene (Uniprot):atpF
Chain IDs:B (auth: I)
Chain Length:184
Number of Molecules:1
Biological Source:Spinacia oleracea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit b', chloroplastic
Gene (Uniprot):ATPF2
Chain IDs:D (auth: J)
Chain Length:222
Number of Molecules:1
Biological Source:Spinacia oleracea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit c, chloroplastic
Gene (Uniprot):atpH
Chain IDs:G (auth: Z), N (auth: Q), O (auth: P), P (auth: O), Q (auth: N), R (auth: M), S (auth: R), T (auth: Y), U (auth: X), V (auth: W), W (auth: S), X (auth: T), Y (auth: U), Z (auth: V)
Chain Length:81
Number of Molecules:14
Biological Source:Spinacia oleracea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit a, chloroplastic
Gene (Uniprot):atpI
Chain IDs:A (auth: a)
Chain Length:507
Number of Molecules:1
Biological Source:Spinacia oleracea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase delta chain, chloroplastic
Gene (Uniprot):ATPD
Chain IDs:C (auth: d)
Chain Length:498
Number of Molecules:1
Biological Source:Spinacia oleracea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase epsilon chain, chloroplastic
Gene (Uniprot):atpE
Chain IDs:E (auth: e)
Chain Length:498
Number of Molecules:1
Biological Source:Spinacia oleracea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase gamma chain, chloroplastic
Gene (Uniprot):ATPC
Chain IDs:F (auth: g)
Chain Length:364
Number of Molecules:1
Biological Source:Spinacia oleracea
Ligand Molecules
Primary Citation
Structural basis of redox modulation on chloroplast ATP synthase.
Commun Biol 3 482 482 (2020)
PMID: 32879423 DOI: 10.1038/s42003-020-01221-8

Abstact

In higher plants, chloroplast ATP synthase has a unique redox switch on its γ subunit that modulates enzyme activity to limit ATP hydrolysis at night. To understand the molecular details of the redox modulation, we used single-particle cryo-EM to determine the structures of spinach chloroplast ATP synthase in both reduced and oxidized states. The disulfide linkage of the oxidized γ subunit introduces a torsional constraint to stabilize the two β hairpin structures. Once reduced, free cysteines alleviate this constraint, resulting in a concerted motion of the enzyme complex and a smooth transition between rotary states to facilitate the ATP synthesis. We added an uncompetitive inhibitor, tentoxin, in the reduced sample to limit the flexibility of the enzyme and obtained high-resolution details. Our cryo-EM structures provide mechanistic insight into the redox modulation of the energy regulation activity of chloroplast ATP synthase.

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Primary Citation of related structures
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