6VME image
Deposition Date 2020-01-27
Release Date 2020-05-20
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6VME
Title:
Human ESCRT-I heterotetramer headpiece
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.19 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 61
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tumor susceptibility gene 101 protein
Gene (Uniprot):TSG101
Chain IDs:A (auth: B), E (auth: F), F (auth: G), G (auth: H), H (auth: I), I (auth: J)
Chain Length:81
Number of Molecules:6
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 37B
Gene (Uniprot):VPS37B
Chain IDs:B (auth: C), J (auth: K), K (auth: L), L (auth: M), M (auth: N), N (auth: O)
Chain Length:71
Number of Molecules:6
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Multivesicular body subunit 12A
Gene (Uniprot):MVB12A
Chain IDs:C (auth: D), O (auth: P), P (auth: Q), Q (auth: R), R (auth: A), S (auth: T)
Chain Length:25
Number of Molecules:6
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 28 homolog
Gene (Uniprot):VPS28
Chain IDs:D (auth: E), T (auth: U), U (auth: V), V (auth: W), W (auth: X), X (auth: Y)
Chain Length:122
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
A helical assembly of human ESCRT-I scaffolds reverse-topology membrane scission.
Nat.Struct.Mol.Biol. 27 570 580 (2020)
PMID: 32424346 DOI: 10.1038/s41594-020-0426-4

Abstact

The ESCRT complexes drive membrane scission in HIV-1 release, autophagosome closure, multivesicular body biogenesis, cytokinesis, and other cell processes. ESCRT-I is the most upstream complex and bridges the system to HIV-1 Gag in virus release. The crystal structure of the headpiece of human ESCRT-I comprising TSG101-VPS28-VPS37B-MVB12A was determined, revealing an ESCRT-I helical assembly with a 12-molecule repeat. Electron microscopy confirmed that ESCRT-I subcomplexes form helical filaments in solution. Mutation of VPS28 helical interface residues blocks filament formation in vitro and autophagosome closure and HIV-1 release in human cells. Coarse-grained (CG) simulations of ESCRT assembly at HIV-1 budding sites suggest that formation of a 12-membered ring of ESCRT-I molecules is a geometry-dependent checkpoint during late stages of Gag assembly and HIV-1 budding and templates ESCRT-III assembly for membrane scission. These data show that ESCRT-I is not merely a bridging adaptor; it has an essential scaffolding and mechanical role in its own right.

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