6VLW image
Deposition Date 2020-01-27
Release Date 2020-12-09
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6VLW
Title:
Crystal Structure of 426cOD in Complex with VRC01 Fab
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.42 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:426cOD
Chain IDs:C (auth: G)
Chain Length:199
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:VRC01 Fab Heavy Chain
Chain IDs:A (auth: H)
Chain Length:227
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:VRC01 Fab Light Chain
Chain IDs:B (auth: L)
Chain Length:210
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
HIV-1 VRC01 Germline-Targeting Immunogens Select Distinct Epitope-Specific B Cell Receptors.
Immunity 53 840 851.e6 (2020)
PMID: 33053332 DOI: 10.1016/j.immuni.2020.09.007

Abstact

Activating precursor B cell receptors of HIV-1 broadly neutralizing antibodies requires specifically designed immunogens. Here, we compared the abilities of three such germline-targeting immunogens against the VRC01-class receptors to activate the targeted B cells in transgenic mice expressing the germline VH of the VRC01 antibody but diverse mouse light chains. Immunogen-specific VRC01-like B cells were isolated at different time points after immunization, their VH and VL genes were sequenced, and the corresponding antibodies characterized. VRC01 B cell sub-populations with distinct cross-reactivity properties were activated by each immunogen, and these differences correlated with distinct biophysical and biochemical features of the germline-targeting immunogens. Our study indicates that the design of effective immunogens to activate B cell receptors leading to protective HIV-1 antibodies will require a better understanding of how the biophysical properties of the epitope and its surrounding surface on the germline-targeting immunogen influence its interaction with the available receptor variants in vivo.

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Primary Citation of related structures