6VLR image
Deposition Date 2020-01-24
Release Date 2020-06-24
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6VLR
Title:
BG505 SOSIP.v5.2 in complex with rhesus macaque Fab RM20E1 and PGT122 Fab
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.42 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Gene (Uniprot):env
Chain IDs:A, C (auth: H), E (auth: G)
Chain Length:475
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BG505 SOSIPv5.2 gp41
Gene (Uniprot):env
Chain IDs:B, D (auth: J), F (auth: I)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:PGT122 Fab Heavy Chain
Chain IDs:G (auth: C), I (auth: D), K (auth: E)
Chain Length:132
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:RM20E1 Fab Heavy Chain
Chain IDs:M (auth: F)
Chain Length:123
Number of Molecules:1
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:PGT122 Fab Light Chain
Chain IDs:H (auth: L), J (auth: K), L (auth: M)
Chain Length:106
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:RM20E1 Fab Kappa Chain
Chain IDs:N
Chain Length:112
Number of Molecules:1
Biological Source:Macaca mulatta
Ligand Molecules
Primary Citation

Abstact

The induction of broad and potent immunity by vaccines is the key focus of research efforts aimed at protecting against HIV-1 infection. Soluble native-like HIV-1 envelope glycoproteins have shown promise as vaccine candidates as they can induce potent autologous neutralizing responses in rabbits and non-human primates. In this study, monoclonal antibodies were isolated and characterized from rhesus macaques immunized with the BG505 SOSIP.664 trimer to better understand vaccine-induced antibody responses. Our studies reveal a diverse landscape of antibodies recognizing immunodominant strain-specific epitopes and non-neutralizing neo-epitopes. Additionally, we isolated a subset of mAbs against an epitope cluster at the gp120-gp41 interface that recognize the highly conserved fusion peptide and the glycan at position 88 and have characteristics akin to several human-derived broadly neutralizing antibodies.

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Protein

Chemical

Disease

Primary Citation of related structures