6VKM image
Entry Detail
PDB ID:
6VKM
Keywords:
Title:
Crystal Structure of Stabilized GP from Makona Variant of Ebola Virus
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-01-21
Release Date:
2020-04-15
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.30
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Virion spike glycoprotein
Mutations:T42A/T577P/K588F,deletion of residues 320-476
Chain IDs:A
Chain Length:494
Number of Molecules:1
Biological Source:Zaire ebolavirus
Ligand Molecules
Primary Citation
Structure-Based Design of Prefusion-Stabilized Filovirus Glycoprotein Trimers.
Cell Rep 30 4540 4550.e3 (2020)
PMID: 32234486 DOI: 10.1016/j.celrep.2020.03.025

Abstact

Ebola virus causes severe hemorrhagic fever, often leading to death in humans. The trimeric fusion glycoprotein (GP) is the sole target for neutralizing antibodies and is the major focus of vaccine development. Soluble GP ectodomains are unstable and mostly monomeric when not fused to a heterologous trimerization domain. Here, we report structure-based designs of Ebola and Marburg GP trimers based on a stabilizing mutation in the hinge loop in refolding region 1 and substitution of a partially buried charge at the interface of the GP1 and GP2 subunits. The combined substitutions (T577P and K588F) substantially increased trimer expression for Ebola GP proteins. We determined the crystal structure of stabilized GP from the Makona Zaire ebolavirus strain without a trimerization domain or complexed ligand. The structure reveals that the stabilized GP adopts the same trimeric prefusion conformation, provides insight into triggering of GP conformational changes, and should inform future filovirus vaccine development.

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Primary Citation of related structures