6VIE image
Deposition Date 2020-01-13
Release Date 2020-07-01
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6VIE
Keywords:
Title:
Structure of caspase-1 in complex with gasdermin D
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.31
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-1 subunit p20
Gene (Uniprot):CASP1
Mutagens:C285A
Chain IDs:A
Chain Length:198
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-1 subunit p10
Gene (Uniprot):CASP1
Chain IDs:B
Chain Length:90
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gasdermin-D
Gene (Uniprot):Gsdmd
Chain IDs:C, D
Chain Length:464
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Caspase-1 Engages Full-Length Gasdermin D through Two Distinct Interfaces That Mediate Caspase Recruitment and Substrate Cleavage.
Immunity 53 106 ? (2020)
PMID: 32553275 DOI: 10.1016/j.immuni.2020.06.007

Abstact

The recognition and cleavage of gasdermin D (GSDMD) by inflammatory caspases-1, 4, 5, and 11 are essential steps in initiating pyroptosis after inflammasome activation. Previous work has identified cleavage site signatures in substrates such as GSDMD, but it is unclear whether these are the sole determinants for caspase engagement. Here we report the crystal structure of a complex between human caspase-1 and the full-length murine GSDMD. In addition to engagement of the GSDMD N- and C-domain linker by the caspase-1 active site, an anti-parallel β sheet at the caspase-1 L2 and L2' loops bound a hydrophobic pocket within the GSDMD C-terminal domain distal to its N-terminal domain. This "exosite" interface endows an additional function for the GSDMD C-terminal domain as a caspase-recruitment module besides its role in autoinhibition. Our study thus reveals dual-interface engagement of GSDMD by caspase-1, which may be applicable to other physiological substrates of caspases.

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Primary Citation of related structures