6VD7 image
Deposition Date 2019-12-23
Release Date 2020-02-26
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6VD7
Title:
Cryo-EM structure of Xenopus tropicalis pannexin 1 channel
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.02 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pannexin
Gene (Uniprot):panx1
Chain IDs:A, B, C, D, E, F, G
Chain Length:344
Number of Molecules:7
Biological Source:Xenopus tropicalis
Ligand Molecules
Primary Citation
The Cryo-EM structure of pannexin 1 reveals unique motifs for ion selection and inhibition.
Elife 9 ? ? (2020)
PMID: 32048993 DOI: 10.7554/eLife.54670

Abstact

Pannexins are large-pore forming channels responsible for ATP release under a variety of physiological and pathological conditions. Although predicted to share similar membrane topology with other large-pore forming proteins such as connexins, innexins, and LRRC8, pannexins have minimal sequence similarity to these protein families. Here, we present the cryo-EM structure of a frog pannexin 1 (Panx1) channel at 3.0 Å. We find that Panx1 protomers harbor four transmembrane helices similar in arrangement to other large-pore forming proteins but assemble as a heptameric channel with a unique constriction formed by Trp74 in the first extracellular loop. Mutating Trp74 or the nearby Arg75 disrupt ion selectivity, whereas altering residues in the hydrophobic groove formed by the two extracellular loops abrogates channel inhibition by carbenoxolone. Our structural and functional study establishes the extracellular loops as important structural motifs for ion selectivity and channel inhibition in Panx1.

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Primary Citation of related structures
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