6VC2 image
Deposition Date 2019-12-20
Release Date 2020-12-23
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6VC2
Keywords:
Title:
LRH-1 bound to SS-RJW100 and a fragment of the Tif2 Coactivator
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor subfamily 5 group A member 2
Gene (Uniprot):NR5A2
Chain IDs:A
Chain Length:245
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor coactivator 2
Gene (Uniprot):NCOA2
Chain IDs:B (auth: C)
Chain Length:15
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Enantiomer-specific activities of an LRH-1 and SF-1 dual agonist.
Sci Rep 10 22279 22279 (2020)
PMID: 33335203 DOI: 10.1038/s41598-020-79251-9

Abstact

Chirality is an important consideration in drug development: it can influence recognition of the intended target, pharmacokinetics, and off-target effects. Here, we investigate how chirality affects the activity and mechanism of action of RJW100, a racemic agonist of the nuclear receptors liver receptor homolog-1 (LRH-1) and steroidogenic factor-1 (SF-1). LRH-1 and SF-1 modulators are highly sought as treatments for metabolic and neoplastic diseases, and RJW100 has one of the few scaffolds shown to activate them. However, enantiomer-specific effects on receptor activation are poorly understood. We show that the enantiomers have similar binding affinities, but RR-RJW100 stabilizes both receptors and is 46% more active than SS-RJW100 in LRH-1 luciferase reporter assays. We present an LRH-1 crystal structure that illuminates striking mechanistic differences: SS-RJW100 adopts multiple configurations in the pocket and fails to make an interaction critical for activation by RR-RJW100. In molecular dynamics simulations, SS-RJW100 attenuates intramolecular signalling important for coregulator recruitment, consistent with previous observations that it weakly recruits coregulators in vitro. These studies provide a rationale for pursuing enantiomerically pure RJW100 derivatives: they establish RR-RJW100 as the stronger LRH-1 agonist and identify a potential for optimizing the SS-RJW100 scaffold for antagonist design.

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Primary Citation of related structures