ISDA: 6VBW

Deposition Date 2019-12-19

Release Date 2020-01-29

Last Version Date 2024-03-06

Entry Detail

PDB ID:

6VBW

Keywords:

IMMUNE SYSTEM

Title:

Cryo-EM structure of Cascade-TniQ-dsDNA ternary complex

Biological Source:

Source Organism(s):

Vibrio cholerae (Taxon ID: 666)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cas8
Chain IDs:D (auth: A)
Chain Length:640
Number of Molecules:1
Biological Source:Vibrio cholerae

UniProt ID:A0A6I8WFX4 Pfam ID:PF09614

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cas7
Chain IDs:E (auth: B), F (auth: C), G (auth: D), H (auth: F), I (auth: E), J (auth: G)
Chain Length:352
Number of Molecules:6
Biological Source:Vibrio cholerae

UniProt ID:A0A6I8WFX5 Pfam ID:PF09615

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cas6
Chain IDs:K (auth: H)
Chain Length:199
Number of Molecules:1
Biological Source:Vibrio cholerae

UniProt ID:A0A6I8WFX3 Pfam ID:PF09618

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:TniQ
Chain IDs:L (auth: I), M (auth: J)
Chain Length:394
Number of Molecules:2
Biological Source:Vibrio cholerae

UniProt ID:A0A6I8WFX7 Pfam ID:PF06527

Polymer Type:polyribonucleotide
Molecule:RNA (61-MER)
Chain IDs:C (auth: K)
Chain Length:61
Number of Molecules:1
Biological Source:Vibrio cholerae

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (100-MER)
Chain IDs:B (auth: L)
Chain Length:100
Number of Molecules:1
Biological Source:Vibrio cholerae

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*CP*AP*GP*TP*CP*AP*TP*CP*AP*CP*CP*AP*AP*TP*TP*TP*AP*TP*TP*TP*A)-3')
Chain IDs:A (auth: M)
Chain Length:22
Number of Molecules:1
Biological Source:Vibrio cholerae

Ligand Molecules

Primary Citation

Structure-function insights into the initial step of DNA integration by a CRISPR-Cas-Transposon complex.

Jia, N, Xie, W, de la Cruz, M.J, Eng, E.T, Patel, D.J.Show

Cell Res. 30 182 184 (2020)

PMID: 31925391 DOI: 10.1038/s41422-019-0272-2

Primary Citation of related structures

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