6VBD image
Entry Detail
PDB ID:
6VBD
Keywords:
HYDROLASE/ANTIBIOTIC
Title:
Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 acylated by ceftriaxone
Biological Source:
Source Organism:
Neisseria gonorrhoeae
Host Organism:
Escherichia coli BL21(DE3)
PDB Version:
Deposition Date:
2019-12-18
Release Date:
2020-04-15
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.80 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
6VBD validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Probable peptidoglycan D,D-transpeptidase PenA
Chain IDs:A
Chain Length:330
Number of Molecules:1
Biological Source:Neisseria gonorrhoeae
UniProt ID:F2Z7K9 Pfam ID:PF00905
Ligand Molecules
CEF
GOL
Primary Citation
Mutations in Neisseria gonorrhoeae penicillin-binding protein 2 associated with extended-spectrum cephalosporin resistance create an energetic barrier against acylation via restriction of protein dynamics
J.Biol.Chem. ? ? ? (2020)
Primary Citation of related structures
6VBD