6V8Z image
Deposition Date 2019-12-12
Release Date 2020-02-05
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6V8Z
Title:
VRC03 and 10-1074 Bound BG505 F14 HIV-1 SOSIP Envelope Trimer Structure
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Gene (Uniprot):env
Chain IDs:A, G, M
Chain Length:472
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:envelope glycoprotein gp41
Gene (Uniprot):env
Chain IDs:B, H, N
Chain Length:147
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VRC03 Fab Heavy Chain
Chain IDs:E (auth: C), K (auth: I), Q (auth: O)
Chain Length:231
Number of Molecules:3
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:10-1074 Fab Heavy Chain
Gene (Uniprot):DKFZp686P15220
Chain IDs:C (auth: D), I (auth: J), O (auth: P)
Chain Length:235
Number of Molecules:3
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:10-1074 Fab Light Chain
Gene (Uniprot):IGL@
Chain IDs:D (auth: E), J (auth: K), P (auth: Q)
Chain Length:211
Number of Molecules:3
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VRC03 Fab Light Chain
Gene (Uniprot):IGK@
Chain IDs:F, L, R
Chain Length:208
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Disruption of the HIV-1 Envelope allosteric network blocks CD4-induced rearrangements.
Nat Commun 11 520 520 (2020)
PMID: 31980614 DOI: 10.1038/s41467-019-14196-w

Abstact

The trimeric HIV-1 Envelope protein (Env) mediates viral-host cell fusion via a network of conformational transitions, with allosteric elements in each protomer orchestrating host receptor-induced exposure of the co-receptor binding site and fusion elements. To understand the molecular details of this allostery, here, we introduce Env mutations aimed to prevent CD4-induced rearrangements in the HIV-1 BG505 Env trimer. Binding analysis and single-molecule Förster Resonance Energy Transfer confirm that these mutations prevent CD4-induced transitions of the HIV-1 Env. Structural analysis by single-particle cryo-electron microscopy performed on the BG505 SOSIP mutant Env proteins shows rearrangements in the gp120 topological layer contacts with gp41. Displacement of a conserved tryptophan (W571) from its typical pocket in these Env mutants renders the Env insensitive to CD4 binding. These results reveal the critical function of W571 as a conformational switch in Env allostery and receptor-mediated viral entry and provide insights on Env conformation that are relevant for vaccine design.

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Primary Citation of related structures
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