6V8X image
Deposition Date 2019-12-12
Release Date 2020-02-05
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6V8X
Title:
VRC01 Bound BG505 F14 HIV-1 SOSIP Envelope Trimer Structure
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Gene (Uniprot):env
Chain IDs:A, E, I
Chain Length:471
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Gene (Uniprot):env
Chain IDs:B, F, J
Chain Length:145
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:VRC01 Fab Heavy Chain
Gene (Uniprot):DKFZp686K03196
Chain IDs:C, G, K
Chain Length:224
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:VRC01 Fab Light Chain
Gene (Uniprot):IGK@
Chain IDs:D, H, L
Chain Length:208
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Disruption of the HIV-1 Envelope allosteric network blocks CD4-induced rearrangements.
Nat Commun 11 520 520 (2020)
PMID: 31980614 DOI: 10.1038/s41467-019-14196-w

Abstact

The trimeric HIV-1 Envelope protein (Env) mediates viral-host cell fusion via a network of conformational transitions, with allosteric elements in each protomer orchestrating host receptor-induced exposure of the co-receptor binding site and fusion elements. To understand the molecular details of this allostery, here, we introduce Env mutations aimed to prevent CD4-induced rearrangements in the HIV-1 BG505 Env trimer. Binding analysis and single-molecule Förster Resonance Energy Transfer confirm that these mutations prevent CD4-induced transitions of the HIV-1 Env. Structural analysis by single-particle cryo-electron microscopy performed on the BG505 SOSIP mutant Env proteins shows rearrangements in the gp120 topological layer contacts with gp41. Displacement of a conserved tryptophan (W571) from its typical pocket in these Env mutants renders the Env insensitive to CD4 binding. These results reveal the critical function of W571 as a conformational switch in Env allostery and receptor-mediated viral entry and provide insights on Env conformation that are relevant for vaccine design.

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